PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01618.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 814aa    MW: 88890.2 Da    PI: 7.8552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01618.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.53e-19314413198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F
  Rsa1.0_01618.1_g00003.1 314 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKVQDVRGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTF 398
                              99**************************666678889***************9989999999***9.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++++  +++l +++++
  Rsa1.0_01618.1_g00003.1 399 SRVD-PGGKLIMGARK 413
                              *766.88888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-29311415IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20311409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-24312413No hitNo description
PfamPF023622.2E-16314413IPR003340B3 DNA binding domain
SMARTSM010199.5E-23314415IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884314415IPR003340B3 DNA binding domain
PROSITE profilePS5105013.582564614IPR011124Zinc finger, CW-type
PfamPF074962.6E-9570611IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MGSKVCMNAS CGSSSSVEWK KGWPLRSGAL ADLCFRCGYL PSPSLIGLKV SVLVFIILSA  60
YETSRFCETF HLEQSGWREC YLCNKRLHCG CIASKLMVEF MDYGGVGCTS CTNCHSKRGE  120
NPGVFSRLPM NNTQHTNGES GVRSEANHFS QPPVPVDDKK EEFKPHLGFS NLMKPDNNVT  180
NTTTTTTGYR HESSSSSPSP SQPSLNMALA TLPYSPSFAT PVADGKKLMG GGGGASSQPH  240
LFQCSASSIL QKPSKILLGP PPPGTSKSAQ ARIGRPPVEG RGKGHLLPRY WPKYTDKELQ  300
QISGNLNLNI VPLFEKTLSA SDAGRIGRLV LPKACAEAYF PPISQSEGIP LKVQDVRGKE  360
WTFQFRFWPN NNSRMYVLEG VTPCIQSMRL QAGDTVTFSR VDPGGKLIMG ARKATYTADM  420
QGCGFANGVS NEDTSSSGVT ENPTSINATS CPSQILEELK GLPEHLSSPN GGNGSKKSEI  480
NGGDDQSRVK EKKRTRTMGA KNKRLLLHSE ESMELRVTWE EAQELLRPSP NAKPTIVVIE  540
EHEFEEFDEP PVFGKRTILT SNPSGEQERW GSCDDCSKWR RLPVDALLPA KWTCSDNVWD  600
QSRCSCSAPE ESLKELENGL RAGKEYKKRR IGVSQTARNE QEPSGLDALA SAAVLGDTLD  660
DSEVATTTRH PRHRVGCSCI VCIQPPSGKG RHKPTCGCTV CSTVKRRFKT LMMRRKKKQL  720
ERDGTAAVDE ENKEGAEPDK KKEGKTGRID LNSDPYNRED VEAVVAVEKQ EESKKSEEGM  780
CWGAAQGGDV LGETELEGGG EAEKTTSEEQ KVAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1631342813130DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1704716KRRFKTLMMRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535020.0AK353502.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636700.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
RefseqXP_013636699.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
RefseqXP_013636698.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLA0A078ELL90.0A0A078ELL9_BRANA; BnaC04g14350D protein
STRINGBra018313.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2